Publications

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2012
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.  2012.  Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol.
Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.
Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.  2012.  Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.
Rotaru A-E, Shrestha PM, Liu F, Ueki T, Nevin K, Summers ZM, Lovley DR.  2012.  Interspecies electron transfer via hydrogen and formate rather than direct electrical connections in cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens.. Appl Environ Microbiol. 78(21):7645-51.
Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C.  2012.  Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. {PLoS} Pathogens. 8:e1002761.
Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch TC, Wu L, He Z, Li G et al..  2012.  Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.. Appl Environ Microbiol. 78(8):2966-72.
Baek K, McKeever R, Rieber K, Sheppard D, Park C, Ergas SJ, Nüsslein K.  2012.  Molecular approach to evaluate biostimulation of 1,2-dibromoethane in contaminated groundwater.. Bioresour Technol. 123C:207-213.
Rotaru C, Woodard TL, Choi S, Nevin KP.  2012.  Spatial heterogeneity of bacterial communities in sediments from an infiltration basin receiving highway runoff.. Microb Ecol. 64(2):461-73.
Richter LV, Sandler SJ, Weis RM.  2012.  Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.
Fang B, Gon S, Park M-H, Kumar K-N, Rotello VM, Nüsslein K, Santore MM.  2012.  Using flow to switch the valency of bacterial capture on engineered surfaces containing immobilized nanoparticles.. Langmuir. 28(20):7803-10.
2011
Holmes DE, Risso C, Smith JA, Lovley DR.  2011.  Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.. Appl Environ Microbiol. 77(17):5926-33.
Fang B, Gon S, Park M, Kumar K-N, Rotello VM, Nusslein K, Santore MM.  2011.  Bacterial adhesion on hybrid cationic nanoparticle-polymer brush surfaces: ionic strength tunes capture from monovalent to multivalent binding.. Colloids Surf B Biointerfaces. 87(1):109-15.
Cassonnet P, Rolloy C, Neveu G, Vidalain P-O, Chantier T, Pellet J, Jones L, Muller M, Demeret C, Gaud G et al..  2011.  Benchmarking a luciferase complementation assay for detecting protein complexes. Nature Methods. 8:990–992.
Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.  2011.  Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.  2011.  Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.  2011.  Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.
Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK.  2011.  Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.
Rich SM, Xu G.  2011.  Resolving the phylogeny of malaria parasites.. Proc Natl Acad Sci U S A. 108(32):12973-4.
Springer AL, Bruhn DF, Kinzel KW, Rosenthal NF, Zukas R, Klingbeil MM.  2011.  Silencing of a putative inner arm dynein heavy chain results in flagellar immotility in Trypanosoma brucei.. Mol Biochem Parasitol. 175(1):68-75.
Johne R, Buck CB, Allander T, Atwood WJ, Garcea RL, Imperiale MJ, Major EO, Ramqvist T, Norkin LC.  2011.  Taxonomical developments in the family Polyomaviridae.. Arch Virol. 156(9):1627-34.
Malvankar NS, Vargas M, Nevin KP, Franks AE, Leang C, Kim B-C, Inoue K, Mester T, Covalla SF, Johnson JP et al..  2011.  Tunable metallic-like conductivity in microbial nanowire networks.. Nat Nanotechnol. 6(9):573-9.

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