Publications

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2009

Juárez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Methé BA. 2009. PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.

2010

Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T. 2010. Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.

2011

Cassonnet P, Rolloy C, Neveu G, Vidalain P-O, Chantier T, Pellet J, Jones L, Muller M, Demeret C, Gaud G et al.. 2011. Benchmarking a luciferase complementation assay for detecting protein complexes. Nature Methods. 8:990–992.

Cassonnet P, Rolloy C, Neveu G, Vidalain P-O, Chantier T, Pellet J, Jones L, Muller M, Demeret C, Gaud G et al.. 2011. Benchmarking a luciferase complementation assay for detecting protein complexes. Nature Methods. 8:990–992.

Qian X, Mester T, Morgado L, Arakawa T, Sharma ML, Inoue K, Joseph C, Salgueiro CA, Maroney MJ, Lovley DR. 2011. Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens.. Biochim Biophys Acta. 1807(4):404-12.

Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. 2011. Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.

Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.

Oslowski DM, Jung J-H, Seo D-H, Park C-S, Holden JF. 2011. Production of hydrogen from α-1,4- and β-1,4-linked saccharides by marine hyperthermophilic Archaea.. Appl Environ Microbiol. 77(10):3169-73.

Johne R, Buck CB, Allander T, Atwood WJ, Garcea RL, Imperiale MJ, Major EO, Ramqvist T, Norkin LC. 2011. Taxonomical developments in the family Polyomaviridae.. Arch Virol. 156(9):1627-34.

Malvankar NS, Vargas M, Nevin KP, Franks AE, Leang C, Kim B-C, Inoue K, Mester T, Covalla SF, Johnson JP et al.. 2011. Tunable metallic-like conductivity in microbial nanowire networks.. Nat Nanotechnol. 6(9):573-9.

2012

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. 2012. Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. 2012. Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al.. 2012. Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al.. 2012. Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.

Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S. 2012. Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.

Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S. 2012. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.

Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C. 2012. Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. {PLoS} Pathogens. 8:e1002761.

Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C. 2012. Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. {PLoS} Pathogens. 8:e1002761.

Jang S, Sandler SJ, Harshey RM. 2012. Mu insertions are repaired by the double-strand break repair pathway of Escherichia coli.. PLoS Genet. 8(4):e1002642.

Swarts BM, Holsclaw CM, Jewett JC, Alber M, Fox DM, M Siegrist S, Leary JA, Kalscheuer R, Bertozzi CR. 2012. Probing the mycobacterial trehalome with bioorthogonal chemistry.. J Am Chem Soc. 134(39):16123-6.

2013

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al.. 2013. Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.

Muller M, Cassonnet P, Favre M, Jacob Y, Demeret C. 2013. A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. Journal of Visualized Experiments.

Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al.. 2013. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.

M Siegrist S, Whiteside S, Jewett JC, Aditham A, Cava F, Bertozzi CR. 2013. (D)-Amino acid chemical reporters reveal peptidoglycan dynamics of an intracellular pathogen.. ACS Chem Biol. 8(3):500-5.

Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S. 2013. Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.

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