Publications

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2007

Gomez-Alvarez V, King GM, Nüsslein K. 2007. Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR. 2007. Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Ueki T, Lovley DR. 2007. Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al.. 2007. Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR. 2007. Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.

Waldron PJ, Petsch ST, Martini AM, Nüsslein K, Nüslein K. 2007. Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter.. Appl Environ Microbiol. 73(13):4171-9.

Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, Pupko T. 2007. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.. Nucleic Acids Res. 35(Web Server issue):W506-11.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al.. 2007. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.

Centore RC, Sandler SJ. 2007. UvrD limits the number and intensities of RecA-green fluorescent protein structures in Escherichia coli K-12.. J Bacteriol. 189(7):2915-20.

2008

Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM. 2008. Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.

Segura D, Mahadevan R, Juárez K, Lovley DR. 2008. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR. 2008. Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.

Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR. 2008. Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.

Chin K-J, Sharma ML, Russell LA, O'Neill KR, Lovley DR. 2008. Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.. Microb Ecol. 55(3):489-99.

2009

Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al.. 2009. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.

Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N. 2009. Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.

Sahu AK, Conneely T, Nüsslein K, Ergas SJ. 2009. Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.

Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al.. 2009. The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al.. 2009. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR. 2009. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.

2010

Ueki T, Lovley DR. 2010. Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.

Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T. 2010. Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.

Aklujkar M, Lovley DR. 2010. Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.

Stout LM, Dodova EN, Tyson JF, Nüsslein K. 2010. Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor.. Water Res. 44(17):4970-9.

Inoue K, Qian X, Morgado L, Kim B-C, Mester T, Izallalen M, Salgueiro CA, Lovley DR. 2010. Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens.. Appl Environ Microbiol. 76(12):3999-4007.

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