Publications

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2001

Sandler SJ, McCool JD, Do TT, Johansen RU. 2001. PriA mutations that affect PriA-PriC function during replication restart.. Mol Microbiol. 41(3):697-704.

Griffith KL, Wolf RE. 2001. Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.

2002

Griffith KL, Shah IM, Myers TE, O'Neill MC, Wolf RE. 2002. Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell.. Biochem Biophys Res Commun. 291(4):979-86.

Childers SE, Ciufo S, Lovley DR. 2002. Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis.. Nature. 416(6882):767-9.

2003

Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ et al.. 2003. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.. Science. 302(5652):1967-9.

Jara M, Núñez C, Campoy S, Fernández de Henestrosa AR, Lovley DR, Barbé J. 2003. Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.

Leang C, Coppi MV, Lovley DR. 2003. OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 185(7):2096-103.

2004

Hinds T, Sandler SJ. 2004. Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.

Holmes DE, Nevin KP, Lovley DR. 2004. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.

Butler JE, Kaufmann F, Coppi MV, Núñez C, Lovley DR. 2004. MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.. J Bacteriol. 186(12):4042-5.

Núñez C, Adams L, Childers S, Lovley DR. 2004. The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens.. J Bacteriol. 186(16):5543-6.

2005

Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ. 2005. Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. 2005. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.

Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR. 2005. Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.

Mehta T, Coppi MV, Childers SE, Lovley DR. 2005. Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(12):8634-41.

Leang C, Lovley DR. 2005. Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.

Sandler SJ. 2005. Requirements for replication restart proteins during constitutive stable DNA replication in Escherichia coli K-12.. Genetics. 169(4):1799-806.

2006

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J. 2006. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.

Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR. 2006. c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.

Khare T, Esteve-Núñez A, Nevin KP, Zhu W, Yates JR, Lovley D, Giometti CS. 2006. Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate.. Proteomics. 6(2):632-40.

Núñez C, Esteve-Núñez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Methé BA. 2006. DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.. J Bacteriol. 188(8):2792-800.

Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al.. 2006. The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.

DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR. 2006. Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.

Kim B-C, Qian X, Leang C, Coppi MV, Lovley DR. 2006. Two putative c-type multiheme cytochromes required for the expression of OmcB, an outer membrane protein essential for optimal Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(8):3138-42.

2007

Renzette N, Gumlaw N, Sandler SJ. 2007. DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12.. Mol Microbiol. 63(1):103-15.

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