Publications

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2009

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR. 2009. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.

Handa N, Amitani I, Gumlaw N, Sandler SJ, Kowalczykowski SC. 2009. Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions.. J Biol Chem. 284(28):18664-73.

Griffith KL, Fitzpatrick MM, Keen EF, Wolf RE. 2009. Two functions of the C-terminal domain of Escherichia coli Rob: mediating "sequestration-dispersal" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease.. J Mol Biol. 388(3):415-30.

Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al.. 2009. Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.

2008

Griffith KL, Grossman AD. 2008. A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.

Griffith KL, Grossman AD. 2008. A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR. 2008. Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.

Lanthier M, Gregory KB, Lovley DR. 2008. Growth with high planktonic biomass in Shewanella oneidensis fuel cells.. FEMS Microbiol Lett. 278(1):29-35.

Griffith KL, Grossman AD. 2008. Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.. Mol Microbiol. 70(4):1012-25.

Griffith KL, Grossman AD. 2008. Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.. Mol Microbiol. 70(4):1012-25.

Gruenig MC, Renzette N, Long E, Chitteni-Pattu S, Inman RB, Cox MM, Sandler SJ. 2008. RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis.. Mol Microbiol. 69(5):1165-79.

Gabriel GJ, Madkour AE, Dabkowski JM, Nelson CF, Nüsslein K, Tew GN. 2008. Synthetic mimic of antimicrobial peptide with nonmembrane-disrupting antibacterial properties.. Biomacromolecules. 9(11):2980-3.

2007

Gibney BP, Nüsslein K. 2007. Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments.. Chemosphere. 70(2):329-36.

Gomez-Alvarez V, King GM, Nüsslein K. 2007. Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.

Renzette N, Gumlaw N, Sandler SJ. 2007. DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12.. Mol Microbiol. 63(1):103-15.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al.. 2007. Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.

Ahrendt AJ, Tollaksen SL, Lindberg C, Zhu W, Yates JR, Nevin KP, Babnigg G, Lovley DR, Giometti CS. 2007. Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor.. Proteomics. 7(22):4148-57.

2006

Khare T, Esteve-Núñez A, Nevin KP, Zhu W, Yates JR, Lovley D, Giometti CS. 2006. Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate.. Proteomics. 6(2):632-40.

Núñez C, Esteve-Núñez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Methé BA. 2006. DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.. J Bacteriol. 188(8):2792-800.

Butler JE, Glaven RH, Esteve-Núñez A, Núñez C, Shelobolina ES, Bond DR, Lovley DR. 2006. Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.. J Bacteriol. 188(2):450-5.

Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al.. 2006. The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.

Mehta T, Childers SE, Glaven R, Lovley DR, Mester T. 2006. A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens.. Microbiology. 152(Pt 8):2257-64.

2005

Griffith KL, Becker SM, Wolf RE. 2005. Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. 2005. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.

Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM. 2005. Genomic analysis of PIS1 gene expression.. Eukaryot Cell. 4(3):604-14.

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