Publications

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2011

Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC. 2011. Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.

Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al.. 2011. Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.

Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al.. 2011. Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.

Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. 2011. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.

Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. 2011. Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.

Strycharz SM, Glaven RH, Coppi MV, Gannon SM, Perpetua LA, Liu A, Nevin KP, Lovley DR. 2011. Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens.. Bioelectrochemistry. 80(2):142-50.

Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al.. 2011. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL. 2011. Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

Malvankar NS, Vargas M, Nevin KP, Franks AE, Leang C, Kim B-C, Inoue K, Mester T, Covalla SF, Johnson JP et al.. 2011. Tunable metallic-like conductivity in microbial nanowire networks.. Nat Nanotechnol. 6(9):573-9.

2010

Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H et al.. 2010. Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.. Environ Sci Technol. 44(23):8897-903.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR. 2010. The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.

Yang T H, Coppi MV, Lovley DR, Sun J. 2010. Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation.. Microb Cell Fact. 9:90.

Chen L, Lopes JM. 2010. Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae.. Yeast. 27(6):345-59.

Morita YS, Yamaryo-Botte Y, Miyanagi K, Callaghan JM, Patterson JH, Crellin PK, Coppel RL, Billman-Jacobe H, Kinoshita T, McConville MJ. 2010. Stress-induced synthesis of phosphatidylinositol 3-phosphate in mycobacteria.. J Biol Chem. 285(22):16643-50.

Morita YS, Yamaryo-Botte Y, Miyanagi K, Callaghan JM, Patterson JH, Crellin PK, Coppel RL, Billman-Jacobe H, Kinoshita T, McConville MJ. 2010. Stress-induced synthesis of phosphatidylinositol 3-phosphate in mycobacteria.. J Biol Chem. 285(22):16643-50.

Morita YS, Yamaryo-Botte Y, Miyanagi K, Callaghan JM, Patterson JH, Crellin PK, Coppel RL, Billman-Jacobe H, Kinoshita T, McConville MJ. 2010. Stress-induced synthesis of phosphatidylinositol 3-phosphate in mycobacteria.. J Biol Chem. 285(22):16643-50.

2009

Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al.. 2009. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.

Sahu AK, Conneely T, Nüsslein KR, Ergas SJ. 2009. Biological perchlorate reduction in packed bed reactors using elemental sulfur.. Environ Sci Technol. 43(12):4466-71.

Sahu AK, Conneely T, Nüsslein K, Ergas SJ. 2009. Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.

Colak S, Nelson CF, Nüsslein K, Tew GN. 2009. Hydrophilic modifications of an amphiphilic polynorbornene and the effects on its hemolytic and antibacterial activity.. Biomacromolecules. 10(2):353-9.

M Siegrist S, Unnikrishnan M, McConnell MJ, Borowsky M, Cheng T-Y, Siddiqi N, Fortune SM, D Moody B, Rubin EJ. 2009. Mycobacterial Esx-3 is required for mycobactin-mediated iron acquisition.. Proc Natl Acad Sci U S A. 106(44):18792-7.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al.. 2009. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR. 2009. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.

Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al.. 2009. Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.

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