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Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.\'a0 2009.\'a0\'a0Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.\par \par Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Meth\'e9 BA, Krushkal J.\'a0 2008.\'a0\'a0Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.\par \par Yan B, Lovley DR, Krushkal J.\'a0 2007.\'a0\'a0Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.\par \par Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.\'a0 2007.\'a0\'a0Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.\par \par Sandler SJ.\'a0 2005.\'a0\'a0Requirements for replication restart proteins during constitutive stable DNA replication in Escherichia coli K-12.. Genetics. 169(4):1799-806.\par \par Yan B, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2004.\'a0\'a0Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.\par \par McCool JD, Long E, Petrosino JF, Sandler HA, Rosenberg SM, Sandler SJ.\'a0 2004.\'a0\'a0Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy.. Mol Microbiol. 53(5):1343-57.\par \par Gardocki M E, Lopes JM.\'a0 2003.\'a0\'a0Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.\par \par Sandler SJ, Marians KJ.\'a0 2000.\'a0\'a0Role of PriA in replication fork reactivation in Escherichia coli.. J Bacteriol. 182(1):9-13.\par \par Sandler SJ, Clark AJ.\'a0 1994.\'a0\'a0RecOR suppression of recF mutant phenotypes in Escherichia coli K-12.. J Bacteriol. 176(12):3661-72.\par \par }