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Yun J, Malvankar NS, Ueki T, Lovley DR.\'a0 2016.\'a0\'a0Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediation.. ISME J. 10(2):310-20.\par \par Tan Y, Adhikari RY, Malvankar NS, Pi S, Ward JE, Woodard TL, Nevin KP, Xia Q, Tuominen MT, Lovley DR.\'a0 2016.\'a0\'a0Synthetic Biological Protein Nanowires with High Conductivity.. Small. 12(33):4481-5.\par \par Liu X, Tremblay P-L, Malvankar NS, Nevin KP, Lovley DR, Vargas M.\'a0 2014.\'a0\'a0A Geobacter sulfurreducens strain expressing pseudomonas aeruginosa type IV pili localizes OmcS on pili but is deficient in Fe(III) oxide reduction and current production.. Appl Environ Microbiol. 80(3):1219-24.\par \par Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.\'a0 2012.\'a0\'a0Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.\par \par Richter LV, Sandler SJ, Weis RM.\'a0 2012.\'a0\'a0Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.\par \par Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS.\'a0 2011.\'a0\'a0Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.\par \par Marceau AH, Bahng S, Massoni SC, George NP, Sandler SJ, Marians KJ, Keck JL.\'a0 2011.\'a0\'a0Structure of the SSB-DNA polymerase III interface and its role in DNA replication.. EMBO J. 30(20):4236-47.\par \par Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.\'a0 2010.\'a0\'a0ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.\par \par Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Meth\'e9 BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..\'a0 2009.\'a0\'a0Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.\par \par Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al..\'a0 2009.\'a0\'a0The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.\par \par Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al..\'a0 2009.\'a0\'a0Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.\par \par Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.\'a0 2008.\'a0\'a0Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.\par \par Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.\par \par Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al..\'a0 2007.\'a0\'a0Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.\par \par Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, Pupko T.\'a0 2007.\'a0\'a0Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.. Nucleic Acids Res. 35(Web Server issue):W506-11.\par \par Kaadige MR, Lopes JM.\'a0 2006.\'a0\'a0Analysis of Opi1p repressor mutants.. Curr Genet. 49(1):30-8.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par Morita YS, Sena CBC, Waller RF, Kurokawa K, Sernee FM, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y et al..\'a0 2006.\'a0\'a0PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria.. J Biol Chem. 281(35):25143-55.\par \par Bond DR, Mester T, Nesb\'f8 CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.\'a0 2005.\'a0\'a0Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.\par \par Griffith KL, Becker SM, Wolf RE.\'a0 2005.\'a0\'a0Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.\par \par Afkar E, Reguera G, Schiffer M, Lovley DR.\'a0 2005.\'a0\'a0A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.. BMC Microbiol. 5:41.\par \par Kim B-C, Leang C, Ding Y-HR, Glaven RH, Coppi MV, Lovley DR.\'a0 2005.\'a0\'a0OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens.. J Bacteriol. 187(13):4505-13.\par \par Mehta T, Coppi MV, Childers SE, Lovley DR.\'a0 2005.\'a0\'a0Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(12):8634-41.\par \par Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.\'a0 2005.\'a0\'a0PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.\par \par Butler JE, Kaufmann F, Coppi MV, N\'fa\'f1ez C, Lovley DR.\'a0 2004.\'a0\'a0MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.. J Bacteriol. 186(12):4042-5.\par \par Gov Y, Borovok I, Korem M, Singh VK, Jayaswal RK, Wilkinson BJ, Rich SM, Balaban N.\'a0 2004.\'a0\'a0Quorum sensing in Staphylococci is regulated via phosphorylation of three conserved histidine residues.. J Biol Chem. 279(15):14665-72.\par \par Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.\'a0 2003.\'a0\'a0Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.\par \par Jara M, N\'fa\'f1ez C, Campoy S, Fern\'e1ndez de Henestrosa AR, Lovley DR, Barb\'e9 J.\'a0 2003.\'a0\'a0Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.\par \par Lim H, Eng J, Yates JR, Tollaksen SL, Giometti CS, Holden JF, Adams MWW, Reich CI, Olsen GJ, Hays LG.\'a0 2003.\'a0\'a0Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry.. J Am Soc Mass Spectrom. 14(9):957-70.\par \par Leang C, Coppi MV, Lovley DR.\'a0 2003.\'a0\'a0OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 185(7):2096-103.\par \par Klingbeil MM, Motyka SA, Englund PT.\'a0 2002.\'a0\'a0Multiple mitochondrial DNA polymerases in Trypanosoma brucei.. Mol Cell. 10(1):175-86.\par \par Kaufmann F, Lovley DR.\'a0 2001.\'a0\'a0Isolation and characterization of a soluble NADPH-dependent Fe(III) reductase from Geobacter sulfurreducens.. J Bacteriol. 183(15):4468-76.\par \par Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR.\'a0 2001.\'a0\'a0Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.\par \par Griffith KL, Wolf RE.\'a0 2001.\'a0\'a0Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.\par \par Rich SM, Ferreira MU, Ayala FJ.\'a0 2000.\'a0\'a0The origin of antigenic diversity in Plasmodium falciparum.. Parasitol Today. 16(9):390-6.\par \par Rich SM, Ayala FJ.\'a0 2000.\'a0\'a0Population structure and recent evolution of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 97(13):6994-7001.\par \par Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.\'a0 1999.\'a0\'a0Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.\par \par Ayala FJ, Escalante AA, Rich SM.\'a0 1999.\'a0\'a0Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.\par \par Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.\'a0 1997.\'a0\'a0Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.\par \par Rich SM, Hudson RR, Ayala FJ.\'a0 1997.\'a0\'a0Plasmodium falciparum antigenic diversity: evidence of clonal population structure.. Proc Natl Acad Sci U S A. 94(24):13040-5.\par \par Klingbeil MM, Walker DJ, Arnette R, Sidawy E, Hayton K, Komuniecki PR, Komuniecki R.\'a0 1996.\'a0\'a0Identification of a novel dihydrolipoyl dehydrogenase-binding protein in the pyruvate dehydrogenase complex of the anaerobic parasitic nematode, Ascaris suum.. J Biol Chem. 271(10):5451-7.\par \par Sandler SJ, Satin LH, Samra HS, Clark AJ.\'a0 1996.\'a0\'a0recA-like genes from three archaean species with putative protein products similar to Rad51 and Dmc1 proteins of the yeast Saccharomyces cerevisiae.. Nucleic Acids Res. 24(11):2125-32.\par \par Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.\'a0 1993.\'a0\'a0Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.\par \par Sandler SJ, Chackerian B, Li JT, Clark AJ.\'a0 1992.\'a0\'a0Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.. Nucleic Acids Res. 20(4):839-45.\par \par Blanar MA, Sandler SJ, Armengod ME, Ream LW, Clark AJ.\'a0 1984.\'a0\'a0Molecular analysis of the recF gene of Escherichia coli.. Proc Natl Acad Sci U S A. 81(15):4622-6.\par \par }