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Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.\'a0 2011.\'a0\'a0A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.\par \par Rich SM, Xu G.\'a0 2011.\'a0\'a0Resolving the phylogeny of malaria parasites.. Proc Natl Acad Sci U S A. 108(32):12973-4.\par \par Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.\'a0 2010.\'a0\'a0ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.\par \par Butler JE, Young ND, Lovley DR.\'a0 2010.\'a0\'a0Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.\par \par Aklujkar M, Lovley DR.\'a0 2010.\'a0\'a0Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.\par \par Chen M, Lopes JM.\'a0 2007.\'a0\'a0Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.\par \par Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.\'a0 2005.\'a0\'a0ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.\par \par Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.\'a0 2003.\'a0\'a0ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.\par \par Rich SM, Ayala FJ.\'a0 2003.\'a0\'a0Progress in malaria research: the case for phylogenetics.. Adv Parasitol. 54:255-80.\par \par Ferreira MU, Ribeiro WL, Tonon AP, Kawamoto F, Rich SM.\'a0 2003.\'a0\'a0Sequence diversity and evolution of the malaria vaccine candidate merozoite surface protein-1 (MSP-1) of Plasmodium falciparum.. Gene. 304:65-75.\par \par Burke WD, Malik HS, Rich SM, Eickbush TH.\'a0 2002.\'a0\'a0Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.\par \par Martz E.\'a0 2002.\'a0\'a0Protein Explorer: easy yet powerful macromolecular visualization.. Trends Biochem Sci. 27(2):107-9.\par \par Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.\'a0 1999.\'a0\'a0Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.\par \par Ayala FJ, Escalante AA, Rich SM.\'a0 1999.\'a0\'a0Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.\par \par Rich SM, Licht MC, Hudson RR, Ayala FJ.\'a0 1998.\'a0\'a0Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 95(8):4425-30.\par \par Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.\'a0 1997.\'a0\'a0Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.\par \par Boyd EF, Hill CW, Rich SM, Hartl DL.\'a0 1996.\'a0\'a0Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.\par \par }