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Philips J, Rabaey K, Lovley DR, Vargas M.\'a0 2017.\'a0\'a0Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.. PLoS One. 12(1):e0170406.\par \par Ueki T, DiDonato LN, Lovley DR.\'a0 2017.\'a0\'a0Toward establishing minimum requirements for extracellular electron transfer in Geobacter sulfurreducens.. FEMS Microbiol Lett. 364(9)\par \par Liu F, Rotaru A-E, Shrestha PM, Malvankar NS, Nevin KP, Lovley DR.\'a0 2015.\'a0\'a0Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.. Environ Microbiol. 17(3):648-55.\par \par Banerjee A, Leang C, Ueki T, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Lactose-inducible system for metabolic engineering of Clostridium ljungdahlii.. Appl Environ Microbiol. 80(8):2410-6.\par \par Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.\'a0 2014.\'a0\'a0Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.\par \par Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..\'a0 2013.\'a0\'a0Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.\par \par Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Ju\'e1rez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..\'a0 2013.\'a0\'a0Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.\par \par Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..\'a0 2013.\'a0\'a0Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.\par \par Vriezen JAC, de Bruijn FJ, N\'fcsslein K.\'a0 2013.\'a0\'a0Identification and characterization of a NaCl-responsive genetic locus involved in survival during desiccation in Sinorhizobium meliloti.. Appl Environ Microbiol. 79(18):5693-700.\par \par Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.\'a0 2013.\'a0\'a0Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.\par \par Butler JE, Young ND, Aklujkar M, Lovley DR.\'a0 2012.\'a0\'a0Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.\par \par Franks AE, Glaven RH, Lovley DR.\'a0 2012.\'a0\'a0Real-time spatial gene expression analysis within current-producing biofilms.. ChemSusChem. 5(6):1092-8.\par \par Tremblay P-L, Lovley DR.\'a0 2012.\'a0\'a0Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens.. J Bacteriol. 194(9):2248-53.\par \par Richter LV, Sandler SJ, Weis RM.\'a0 2012.\'a0\'a0Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.\par \par Mahadevan R, Palsson B\'d8, Lovley DR.\'a0 2011.\'a0\'a0In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.\par \par Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.\'a0 2010.\'a0\'a0Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.\par \par Butler JE, Young ND, Lovley DR.\'a0 2010.\'a0\'a0Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.\par \par Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.\'a0 2010.\'a0\'a0Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.\par \par Krushkal J, Ju\'e1rez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.\'a0 2010.\'a0\'a0Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.\par \par N'guessan LA, Elifantz H, Nevin KP, Mouser PJ, Meth\'e9 B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT et al..\'a0 2010.\'a0\'a0Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer.. ISME J. 4(2):253-66.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens.. Nucleic Acids Res. 38(21):7485-99.\par \par Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Meth\'e9 BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..\'a0 2009.\'a0\'a0Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.\par \par Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.\'a0 2009.\'a0\'a0The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.\par \par Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Ju\'e1rez K, N\'fa\'f1ez C, Reguera G, DiDonato R, Postier B et al..\'a0 2009.\'a0\'a0Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.\par \par Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.\'a0 2009.\'a0\'a0GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.\par \par Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.\'a0 2009.\'a0\'a0Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.\par \par Ju\'e1rez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Meth\'e9 BA.\'a0 2009.\'a0\'a0PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.\par \par Long JE, Renzette N, Sandler SJ.\'a0 2009.\'a0\'a0Suppression of constitutive SOS expression by recA4162 (I298V) and recA4164 (L126V) requires UvrD and RecX in Escherichia coli K-12.. Mol Microbiol. 73(2):226-39.\par \par Griffith KL, Fitzpatrick MM, Keen EF, Wolf RE.\'a0 2009.\'a0\'a0Two functions of the C-terminal domain of Escherichia coli Rob: mediating "sequestration-dispersal" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease.. J Mol Biol. 388(3):415-30.\par \par Centore RC, Leeson MC, Sandler SJ.\'a0 2009.\'a0\'a0UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus.. J Bacteriol. 191(5):1429-38.\par \par Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Meth\'e9 BA, Krushkal J.\'a0 2008.\'a0\'a0Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.\par \par Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.\'a0 2008.\'a0\'a0Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.\par \par Segura D, Mahadevan R, Ju\'e1rez K, Lovley DR.\'a0 2008.\'a0\'a0Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.\par \par Griffith KL, Grossman AD.\'a0 2008.\'a0\'a0A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.\par \par Mahadevan R, Lovley DR.\'a0 2008.\'a0\'a0The degree of redundancy in metabolic genes is linked to mode of metabolism.. Biophys J. 94(4):1216-20.\par \par Long J E, Renzette N, Centore RC, Sandler SJ.\'a0 2008.\'a0\'a0Differential requirements of two recA mutants for constitutive SOS expression in Escherichia coli K-12.. PLoS One. 3(12):e4100.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Griffith KL, Grossman AD.\'a0 2008.\'a0\'a0Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.. Mol Microbiol. 70(4):1012-25.\par \par Kim B-C, Postier BL, Didonato RJ, Chaudhuri SK, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.. Bioelectrochemistry. 73(1):70-5.\par \par Kim B-C, Lovley DR.\'a0 2008.\'a0\'a0Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens.. FEMS Microbiol Lett. 286(1):39-44.\par \par Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.\'a0 2008.\'a0\'a0Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.\par \par Renzette N, Gumlaw N, Sandler SJ.\'a0 2007.\'a0\'a0DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12.. Mol Microbiol. 63(1):103-15.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.\par \par Yan B, Lovley DR, Krushkal J.\'a0 2007.\'a0\'a0Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.\par \par Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.\'a0 2007.\'a0\'a0Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.\par \par Ueki T, Lovley DR.\'a0 2007.\'a0\'a0Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par N\'fa\'f1ez C, Esteve-N\'fa\'f1ez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Meth\'e9 BA.\'a0 2006.\'a0\'a0DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.. J Bacteriol. 188(8):2792-800.\par \par Kovacevic S, Anderson D, Morita YS, Patterson J, Haites R, McMillan BNI, Coppel R, McConville MJ, Billman-Jacobe H.\'a0 2006.\'a0\'a0Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria.. J Biol Chem. 281(14):9011-7.\par \par Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Meth\'e9 BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR.\'a0 2006.\'a0\'a0Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.\par \par DiDonato LN, Sullivan SA, Meth\'e9 BA, Nevin KP, England R, Lovley DR.\'a0 2006.\'a0\'a0Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.\par \par Leang C, Adams LA, Chin K-J, Nevin KP, Meth\'e9 BA, Webster J, Sharma ML, Lovley DR.\'a0 2005.\'a0\'a0Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 187(17):5918-26.\par \par Griffith KL, Becker SM, Wolf RE.\'a0 2005.\'a0\'a0Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.\par \par Kim B-C, Leang C, Ding Y-HR, Glaven RH, Coppi MV, Lovley DR.\'a0 2005.\'a0\'a0OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens.. J Bacteriol. 187(13):4505-13.\par \par Leang C, Lovley DR.\'a0 2005.\'a0\'a0Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.\par \par Sandler SJ.\'a0 2005.\'a0\'a0Requirements for replication restart proteins during constitutive stable DNA replication in Escherichia coli K-12.. Genetics. 169(4):1799-806.\par \par Hinds T, Sandler SJ.\'a0 2004.\'a0\'a0Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.\par \par Griffith KL, Wolf RE.\'a0 2004.\'a0\'a0Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.\par \par McCool JD, Long E, Petrosino JF, Sandler HA, Rosenberg SM, Sandler SJ.\'a0 2004.\'a0\'a0Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy.. Mol Microbiol. 53(5):1343-57.\par \par N\'fa\'f1ez C, Adams L, Childers S, Lovley DR.\'a0 2004.\'a0\'a0The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens.. J Bacteriol. 186(16):5543-6.\par \par Leang C, Coppi MV, Lovley DR.\'a0 2003.\'a0\'a0OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 185(7):2096-103.\par \par Lovley DR.\'a0 2002.\'a0\'a0Analysis of the genetic potential and gene expression of microbial communities involved in the in situ bioremediation of uranium and harvesting electrical energy from organic matter.. OMICS. 6(4):331-9.\par \par Griffith KL, Wolf RE.\'a0 2002.\'a0\'a0A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.\par \par Griffith KL, Shah IM, Myers TE, O'Neill MC, Wolf RE.\'a0 2002.\'a0\'a0Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell.. Biochem Biophys Res Commun. 291(4):979-86.\par \par Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR.\'a0 2001.\'a0\'a0Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.\par \par Hegde S, Sandler SJ, Clark AJ, Madiraju MV.\'a0 1995.\'a0\'a0recO and recR mutations delay induction of the SOS response in Escherichia coli.. Mol Gen Genet. 246(2):254-8.\par \par Sandler SJ, Clark AJ.\'a0 1994.\'a0\'a0Mutational analysis of sequences in the recF gene of Escherichia coli K-12 that affect expression.. J Bacteriol. 176(13):4011-6.\par \par Sandler SJ.\'a0 1994.\'a0\'a0Studies on the mechanism of reduction of UV-inducible sulAp expression by recF overexpression in Escherichia coli K-12.. Mol Gen Genet. 245(6):741-9.\par \par N\'fcsslein K, Maris D, Timmis K, Dwyer DF.\'a0 1992.\'a0\'a0Expression and transfer of engineered catabolic pathways harbored by Pseudomonas spp. introduced into activated sludge microcosms.. Appl Environ Microbiol. 58(10):3380-6.\par \par Sandler SJ, Clark AJ.\'a0 1990.\'a0\'a0Factors affecting expression of the recF gene of Escherichia coli K-12.. Gene. 86(1):35-43.\par \par }