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Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF.\'a0 2015.\'a0\'a0Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.\par \par Smith JA, Tremblay P-L, Shrestha PMalla, Snoeyenbos-West OL, Franks AE, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.. Appl Environ Microbiol. 80(14):4331-40.\par \par Zhang T, Bain TS, Barlett MA, Dar SA, Snoeyenbos-West OL, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1.. Microbiology (Reading). 160(Pt 1):123-129.\par \par Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.\'a0 2013.\'a0\'a0Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.\par \par Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.\'a0 2012.\'a0\'a0Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.\par \par Boles AR, Conneely T, McKeever R, Nixon P, N\'fcsslein KR, Ergas SJ.\'a0 2012.\'a0\'a0Performance of a pilot-scale packed bed reactor for perchlorate reduction using a sulfur oxidizing bacterial consortium.. Biotechnol Bioeng. 109(3):637-46.\par \par Patel KK, Salva PS, Webley WC.\'a0 2011.\'a0\'a0Colonization of paediatric lower respiratory tract with genital Mycoplasma species.. Respirology. 16(7):1081-7.\par \par Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.\'a0 2011.\'a0\'a0A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.\par \par Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.\'a0 2011.\'a0\'a0Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.\par \par Miletto M, Williams KH, N'Guessan AL, Lovley DR.\'a0 2011.\'a0\'a0Molecular analysis of the metabolic rates of discrete subsurface populations of sulfate reducers.. Appl Environ Microbiol. 77(18):6502-9.\par \par Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC.\'a0 2010.\'a0\'a0Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.\par \par Aklujkar M, Lovley DR.\'a0 2010.\'a0\'a0Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.\par \par Deangelis KM, Silver WL, Thompson AW, Firestone MK.\'a0 2010.\'a0\'a0Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.\par \par Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.\'a0 2009.\'a0\'a0Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.\par \par Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.\'a0 2009.\'a0\'a0Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.\par \par Butler JE, Young ND, Lovley DR.\'a0 2009.\'a0\'a0Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.. BMC Genomics. 10:103.\par \par Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.\'a0 2009.\'a0\'a0The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.\par \par Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..\'a0 2009.\'a0\'a0Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.\par \par Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Ju\'e1rez K, N\'fa\'f1ez C, Reguera G, DiDonato R, Postier B et al..\'a0 2009.\'a0\'a0Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.\par \par Sahu AK, Conneely T, N\'fcsslein K, Ergas SJ.\'a0 2009.\'a0\'a0Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.\par \par Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.\'a0 2009.\'a0\'a0Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.\par \par Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.\'a0 2009.\'a0\'a0Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.\par \par Centore RC, Leeson MC, Sandler SJ.\'a0 2009.\'a0\'a0UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus.. J Bacteriol. 191(5):1429-38.\par \par Griffith KL, Grossman AD.\'a0 2008.\'a0\'a0A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.\par \par Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR.\'a0 2008.\'a0\'a0Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.\par \par Risso C, Meth\'e9 BA, Elifantz H, Holmes DE, Lovley DR.\'a0 2008.\'a0\'a0Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.\par \par Chin K-J, Sharma ML, Russell LA, O'Neill KR, Lovley DR.\'a0 2008.\'a0\'a0Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.. Microb Ecol. 55(3):489-99.\par \par Gruenig MC, Renzette N, Long E, Chitteni-Pattu S, Inman RB, Cox MM, Sandler SJ.\'a0 2008.\'a0\'a0RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis.. Mol Microbiol. 69(5):1165-79.\par \par Centore RC, Lestini R, Sandler SJ.\'a0 2008.\'a0\'a0XthA (Exonuclease III) regulates loading of RecA onto DNA substrates in log phase Escherichia coli cells.. Mol Microbiol. 67(1):88-101.\par \par Gibney BP, N\'fcsslein K.\'a0 2007.\'a0\'a0Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments.. Chemosphere. 70(2):329-36.\par \par Gomez-Alvarez V, King GM, N\'fcsslein K.\'a0 2007.\'a0\'a0Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.\par \par Renzette N, Gumlaw N, Sandler SJ.\'a0 2007.\'a0\'a0DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12.. Mol Microbiol. 63(1):103-15.\par \par Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.\'a0 2007.\'a0\'a0Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.\par \par Lopper M, Boonsombat R, Sandler SJ, Keck JL.\'a0 2007.\'a0\'a0A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.\par \par Ueki T, Lovley DR.\'a0 2007.\'a0\'a0Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.\par \par Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.\'a0 2007.\'a0\'a0Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.\par \par Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.\'a0 2007.\'a0\'a0Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.\par \par Centore RC, Sandler SJ.\'a0 2007.\'a0\'a0UvrD limits the number and intensities of RecA-green fluorescent protein structures in Escherichia coli K-12.. J Bacteriol. 189(7):2915-20.\par \par Bond DR, Mester T, Nesb\'f8 CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.\'a0 2005.\'a0\'a0Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.\par \par Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.\'a0 2005.\'a0\'a0Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.\par \par Renzette N, Gumlaw N, Nordman JT, Krieger M, Yeh S-P, Long E, Centore R, Boonsombat R, Sandler SJ.\'a0 2005.\'a0\'a0Localization of RecA in Escherichia coli K-12 using RecA-GFP.. Mol Microbiol. 57(4):1074-85.\par \par Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR.\'a0 2005.\'a0\'a0Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.\par \par Leang C, Lovley DR.\'a0 2005.\'a0\'a0Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.\par \par Sandler SJ.\'a0 2005.\'a0\'a0Requirements for replication restart proteins during constitutive stable DNA replication in Escherichia coli K-12.. Genetics. 169(4):1799-806.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.\par \par McCool JD, Ford CC, Sandler SJ.\'a0 2004.\'a0\'a0A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.\par \par Griffith KL, Wolf RE.\'a0 2004.\'a0\'a0Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.\par \par Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.\'a0 2003.\'a0\'a0Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.\par \par Kashefi K, Holmes DE, Baross JA, Lovley DR.\'a0 2003.\'a0\'a0Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.. Appl Environ Microbiol. 69(5):2985-93.\par \par Finneran KT, Forbush HM, VanPraagh C GV, Lovley DR.\'a0 2002.\'a0\'a0Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.\par \par Chapelle FH, O'Neill K, Bradley PM, Meth\'e9 BA, Ciufo SA, Knobel LRL, Lovley DR.\'a0 2002.\'a0\'a0A hydrogen-based subsurface microbial community dominated by methanogens.. Nature. 415(6869):312-5.\par \par Hayes LA, Lovley DR.\'a0 2002.\'a0\'a0Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.\par \par Rich SM, Sawyer SA, Barbour AG.\'a0 2001.\'a0\'a0Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium.. Proc Natl Acad Sci U S A. 98(26):15038-43.\par \par Griffith KL, Wolf RE.\'a0 2001.\'a0\'a0Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.\par \par Cox MM, Goodman MF, Kreuzer KN, Sherratt DJ, Sandler SJ, Marians KJ.\'a0 2000.\'a0\'a0The importance of repairing stalled replication forks.. Nature. 404(6773):37-41.\par \par Bazylinski DA, Dean AJ, Sch\'fcler D, Phillips EJ, Lovley DR.\'a0 2000.\'a0\'a0N2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species.. Environ Microbiol. 2(3):266-73.\par \par Sandler SJ, Marians KJ.\'a0 2000.\'a0\'a0Role of PriA in replication fork reactivation in Escherichia coli.. J Bacteriol. 182(1):9-13.\par \par Sandler SJ, Marians KJ, Zavitz KH, Coutu J, Parent MA, Clark AJ.\'a0 1999.\'a0\'a0dnaC mutations suppress defects in DNA replication- and recombination-associated functions in priB and priC double mutants in Escherichia coli K-12.. Mol Microbiol. 34(1):91-101.\par \par Coates JD, Ellis DJ, Gaw CV, Lovley DR.\'a0 1999.\'a0\'a0Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer.. Int J Syst Bacteriol. 49 Pt 4:1615-22.\par \par Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR.\'a0 1999.\'a0\'a0Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer.. Appl Environ Microbiol. 65(7):3056-63.\par \par N\'fcsslein K, Tiedje JM.\'a0 1999.\'a0\'a0Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil.. Appl Environ Microbiol. 65(8):3622-6.\par \par N\'fcsslein K, Tiedje JM.\'a0 1998.\'a0\'a0Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition.. Appl Environ Microbiol. 64(4):1283-9.\par \par Boyd EF, Hill CW, Rich SM, Hartl DL.\'a0 1996.\'a0\'a0Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.\par \par Sandler SJ.\'a0 1996.\'a0\'a0Overlapping functions for recF and priA in cell viability and UV-inducible SOS expression are distinguished by dnaC809 in Escherichia coli K-12.. Mol Microbiol. 19(4):871-80.\par \par Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ.\'a0 1994.\'a0\'a0Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.. Appl Environ Microbiol. 60(10):3752-9.\par \par Sandler SJ, Clark AJ.\'a0 1993.\'a0\'a0Use of high and low level overexpression plasmids to test mutant alleles of the recF gene of Escherichia coli K-12 for partial activity.. Genetics. 135(3):643-54.\par \par Sandler SJ, Chackerian B, Li JT, Clark AJ.\'a0 1992.\'a0\'a0Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.. Nucleic Acids Res. 20(4):839-45.\par \par }