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Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.\'a0 2016.\'a0\'a0Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.. Bioresour Technol. 209:148-56.\par \par Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF.\'a0 2015.\'a0\'a0Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.\par \par Hensley SA, Jung J-H, Park C-S, Holden JF.\'a0 2014.\'a0\'a0Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.\par \par Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.\'a0 2013.\'a0\'a0Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.\par \par Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.\'a0 2013.\'a0\'a0Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.\par \par Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..\'a0 2013.\'a0\'a0Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.\par \par Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.\'a0 2012.\'a0\'a0Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.\par \par Boles AR, Conneely T, McKeever R, Nixon P, N\'fcsslein KR, Ergas SJ.\'a0 2012.\'a0\'a0Performance of a pilot-scale packed bed reactor for perchlorate reduction using a sulfur oxidizing bacterial consortium.. Biotechnol Bioeng. 109(3):637-46.\par \par Deangelis KM, Firestone MK.\'a0 2012.\'a0\'a0Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.\par \par Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.\'a0 2011.\'a0\'a0Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.\par \par Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.\'a0 2011.\'a0\'a0Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.\par \par Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.\'a0 2011.\'a0\'a0Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.\par \par Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK.\'a0 2011.\'a0\'a0Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.\par \par Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..\'a0 2011.\'a0\'a0PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.\par \par Williams KH, Nevin KP, Franks A, Englert A, Long PE, Lovley DR.\'a0 2010.\'a0\'a0Electrode-based approach for monitoring in situ microbial activity during subsurface bioremediation.. Environ Sci Technol. 44(1):47-54.\par \par Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC.\'a0 2010.\'a0\'a0Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.\par \par Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.\'a0 2009.\'a0\'a0Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.\par \par Sahu AK, Conneely T, N\'fcsslein K, Ergas SJ.\'a0 2009.\'a0\'a0Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.\par \par Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.\'a0 2009.\'a0\'a0Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.\par \par Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR.\'a0 2008.\'a0\'a0Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.\par \par Chin K-J, Sharma ML, Russell LA, O'Neill KR, Lovley DR.\'a0 2008.\'a0\'a0Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.. Microb Ecol. 55(3):489-99.\par \par N'guessan LA, Vrionis HA, Resch CT, Long PE, Lovley DR.\'a0 2008.\'a0\'a0Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction.. Environ Sci Technol. 42(8):2999-3004.\par \par Gibney BP, N\'fcsslein K.\'a0 2007.\'a0\'a0Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments.. Chemosphere. 70(2):329-36.\par \par Gomez-Alvarez V, King GM, N\'fcsslein K.\'a0 2007.\'a0\'a0Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.\par \par Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.\'a0 2007.\'a0\'a0Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.\par \par Richter H, Lanthier M, Nevin KP, Lovley DR.\'a0 2007.\'a0\'a0Lack of electricity production by Pelobacter carbinolicus indicates that the capacity for Fe(III) oxide reduction does not necessarily confer electron transfer ability to fuel cell anodes.. Appl Environ Microbiol. 73(16):5347-53.\par \par Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.\'a0 2007.\'a0\'a0Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.\par \par Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.\'a0 2007.\'a0\'a0Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.\par \par Waldron PJ, Petsch ST, Martini AM, N\'fcsslein K, N\'fcslein K.\'a0 2007.\'a0\'a0Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter.. Appl Environ Microbiol. 73(13):4171-9.\par \par Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..\'a0 2007.\'a0\'a0Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.\par \par Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.\'a0 2005.\'a0\'a0Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.\par \par Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR.\'a0 2005.\'a0\'a0Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.\par \par Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.\'a0 2005.\'a0\'a0Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.\par \par Stout LM, N\'fcsslein K.\'a0 2005.\'a0\'a0Shifts in rhizoplane communities of aquatic plants after cadmium exposure.. Appl Environ Microbiol. 71(5):2484-92.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.\par \par Gregory KB, Bond DR, Lovley DR.\'a0 2004.\'a0\'a0Graphite electrodes as electron donors for anaerobic respiration.. Environ Microbiol. 6(6):596-604.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.\par \par Shelobolina ES, Sullivan SA, O'Neill KR, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0Isolation, characterization, and U(VI)-reducing potential of a facultatively anaerobic, acid-resistant Bacterium from Low-pH, nitrate- and U(VI)-contaminated subsurface sediment and description of Salmonella subterranea sp. nov.. Appl Environ Microbiol. 70(5):2959-65.\par \par Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.\'a0 2004.\'a0\'a0Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.\par \par Holmes DE, Nicoll JS, Bond DR, Lovley DR.\'a0 2004.\'a0\'a0Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.. Appl Environ Microbiol. 70(10):6023-30.\par \par Cummings DE, Snoeyenbos-West OL, Newby DT, Niggemyer AM, Lovley DR, Achenbach LA, Rosenzweig RF.\'a0 2003.\'a0\'a0Diversity of Geobacteraceae species inhabiting metal-polluted freshwater lake sediments ascertained by 16S rDNA analyses.. Microb Ecol. 46(2):257-69.\par \par Nevin KP, Finneran KT, Lovley DR.\'a0 2003.\'a0\'a0Microorganisms associated with uranium bioremediation in a high-salinity subsurface sediment.. Appl Environ Microbiol. 69(6):3672-5.\par \par Finneran KT, Johnsen CV, Lovley DR.\'a0 2003.\'a0\'a0Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).. Int J Syst Evol Microbiol. 53(Pt 3):669-73.\par \par Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A et al..\'a0 2003.\'a0\'a0Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.. Appl Environ Microbiol. 69(10):5884-91.\par \par Finneran KT, Forbush HM, VanPraagh C GV, Lovley DR.\'a0 2002.\'a0\'a0Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.\par \par Bond DR, Holmes DE, Tender LM, Lovley DR.\'a0 2002.\'a0\'a0Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.\par \par Holmes DE, Finneran KT, O'Neil RA, Lovley DR.\'a0 2002.\'a0\'a0Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments.. Appl Environ Microbiol. 68(5):2300-6.\par \par Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.\'a0 2002.\'a0\'a0Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.\par \par Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR.\'a0 2002.\'a0\'a0Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.\par \par Chapelle FH, O'Neill K, Bradley PM, Meth\'e9 BA, Ciufo SA, Knobel LRL, Lovley DR.\'a0 2002.\'a0\'a0A hydrogen-based subsurface microbial community dominated by methanogens.. Nature. 415(6869):312-5.\par \par Hayes LA, Lovley DR.\'a0 2002.\'a0\'a0Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.\par \par Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR.\'a0 2002.\'a0\'a0Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.\par \par Stults JR, Snoeyenbos-West O, Methe B, Lovley DR, Chandler DP.\'a0 2001.\'a0\'a0Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments.. Appl Environ Microbiol. 67(6):2781-9.\par \par Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR.\'a0 2001.\'a0\'a0Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers.. Int J Syst Evol Microbiol. 51(Pt 2):581-8.\par \par Rich SM, Armstrong PM, Smith RD, Telford SR.\'a0 2001.\'a0\'a0Lone star tick-infecting borreliae are most closely related to the agent of bovine borreliosis.. J Clin Microbiol. 39(2):494-7.\par \par Snoeyenbos-West O, Van Praagh CG, Lovley DR.\'a0 2001.\'a0\'a0Trichlorobacter thiogenes should be renamed as a Geobacter species.. Appl Environ Microbiol. 67(2):1020-2.\par \par Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.\'a0 1999.\'a0\'a0Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.\par \par Coates JD, Ellis DJ, Gaw CV, Lovley DR.\'a0 1999.\'a0\'a0Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer.. Int J Syst Bacteriol. 49 Pt 4:1615-22.\par \par Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR.\'a0 1999.\'a0\'a0Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer.. Appl Environ Microbiol. 65(7):3056-63.\par \par Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS.\'a0 1999.\'a0\'a0Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.. Int J Syst Bacteriol. 49 Pt 3:1177-80.\par \par Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR.\'a0 1998.\'a0\'a0Recovery of humic-reducing bacteria from a diversity of environments.. Appl Environ Microbiol. 64(4):1504-9.\par \par Newman DK, Kennedy EK, Coates JD, Ahmann D, Ellis DJ, Lovley DR, Morel FM.\'a0 1997.\'a0\'a0Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov.. Arch Microbiol. 168(5):380-8.\par \par Coates JD, Phillips EJ, Lonergan DJ, Jenter H, Lovley DR.\'a0 1996.\'a0\'a0Isolation of Geobacter species from diverse sedimentary environments.. Appl Environ Microbiol. 62(5):1531-6.\par \par Lonergan DJ, Jenter HL, Coates JD, Phillips EJ, Schmidt TM, Lovley DR.\'a0 1996.\'a0\'a0Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria.. J Bacteriol. 178(8):2402-8.\par \par Coates JD, Lonergan DJ, Philips EJ, Jenter H, Lovley DR.\'a0 1995.\'a0\'a0Desulfuromonas palmitatis sp. nov., a marine dissimilatory Fe(III) reducer that can oxidize long-chain fatty acids.. Arch Microbiol. 164(6):406-13.\par \par Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD.\'a0 1995.\'a0\'a0Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.. Mol Phylogenet Evol. 4(4):361-5.\par \par Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.\'a0 1995.\'a0\'a0Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.\par \par Lovley DR, Phillips EJ, Lonergan DJ, Widman PK.\'a0 1995.\'a0\'a0Fe(III) and S0 reduction by Pelobacter carbinolicus.. Appl Environ Microbiol. 61(6):2132-8.\par \par Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ.\'a0 1994.\'a0\'a0Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.. Appl Environ Microbiol. 60(10):3752-9.\par \par Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJ, Gorby YA, Goodwin S.\'a0 1993.\'a0\'a0Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals.. Arch Microbiol. 159(4):336-44.\par \par }