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Sha K, Choi S-H, Im J, Lee GG, Loeffler F, Park JH.\'a0 2014.\'a0\'a0Regulation of ethanol-related behavior and ethanol metabolism by the Corazonin neurons and Corazonin receptor in Drosophila melanogaster.. PLoS One. 9(1):e87062.\par \par Shetty A, Swaminathan A, Lopes JM.\'a0 2013.\'a0\'a0Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.\par \par He Y, Swaminathan A, Lopes JM.\'a0 2012.\'a0\'a0Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.\par \par Shetty A, Lopes JM.\'a0 2010.\'a0\'a0Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.. Eukaryot Cell. 9(12):1845-55.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.\par \par Krushkal J, Ju\'e1rez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.\'a0 2010.\'a0\'a0Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens.. Nucleic Acids Res. 38(21):7485-99.\par \par M Siegrist S, Unnikrishnan M, McConnell MJ, Borowsky M, Cheng T-Y, Siddiqi N, Fortune SM, D Moody B, Rubin EJ.\'a0 2009.\'a0\'a0Mycobacterial Esx-3 is required for mycobactin-mediated iron acquisition.. Proc Natl Acad Sci U S A. 106(44):18792-7.\par \par Ju\'e1rez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Meth\'e9 BA.\'a0 2009.\'a0\'a0PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.\par \par Griffith KL, Fitzpatrick MM, Keen EF, Wolf RE.\'a0 2009.\'a0\'a0Two functions of the C-terminal domain of Escherichia coli Rob: mediating "sequestration-dispersal" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease.. J Mol Biol. 388(3):415-30.\par \par Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Meth\'e9 BA, Krushkal J.\'a0 2008.\'a0\'a0Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.\par \par Griffith KL, Grossman AD.\'a0 2008.\'a0\'a0A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Kim B-C, Postier BL, Didonato RJ, Chaudhuri SK, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.. Bioelectrochemistry. 73(1):70-5.\par \par Jani NM, Lopes JM.\'a0 2008.\'a0\'a0Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p.. Mol Microbiol. 70(6):1529-39.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.\par \par Yan B, Lovley DR, Krushkal J.\'a0 2007.\'a0\'a0Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.\par \par Ueki T, Lovley DR.\'a0 2007.\'a0\'a0Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.\par \par Chen M, Hancock LC, Lopes JM.\'a0 2007.\'a0\'a0Transcriptional regulation of yeast phospholipid biosynthetic genes.. Biochim Biophys Acta. 1771(3):310-21.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par Griffith KL, Becker SM, Wolf RE.\'a0 2005.\'a0\'a0Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.\par \par Leang C, Lovley DR.\'a0 2005.\'a0\'a0Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.\par \par Griffith KL, Shah IM, Wolf RE.\'a0 2004.\'a0\'a0Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons.. Mol Microbiol. 51(6):1801-16.\par \par Gardocki M E, Lopes JM.\'a0 2003.\'a0\'a0Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.\par \par Jara M, N\'fa\'f1ez C, Campoy S, Fern\'e1ndez de Henestrosa AR, Lovley DR, Barb\'e9 J.\'a0 2003.\'a0\'a0Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.\par \par Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.\'a0 2000.\'a0\'a0Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.\par \par Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE.\'a0 1999.\'a0\'a0Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.\par \par Sandler SJ, Clark AJ.\'a0 1990.\'a0\'a0Factors affecting expression of the recF gene of Escherichia coli K-12.. Gene. 86(1):35-43.\par \par }