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Ueki T, Walker DJF, Tremblay P-L, Nevin KP, Ward JE, Woodard TL, Nonnenmann SS, Lovley DR.\'a0 2019.\'a0\'a0Decorating the Outer Surface of Microbially Produced Protein Nanowires with Peptides.. ACS Synth Biol. 8(8):1809-1817.\par \par Salas-Santiago B, Lopes JM.\'a0 2014.\'a0\'a0Saccharomyces cerevisiae essential genes with an Opi- phenotype.. G3 (Bethesda). 4(4):761-7.\par \par Shetty A, Swaminathan A, Lopes JM.\'a0 2013.\'a0\'a0Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.\par \par He Y, Swaminathan A, Lopes JM.\'a0 2012.\'a0\'a0Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.\par \par Shetty A, Lopes JM.\'a0 2010.\'a0\'a0Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.. Eukaryot Cell. 9(12):1845-55.\par \par Chen L, Lopes JM.\'a0 2010.\'a0\'a0Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae.. Yeast. 27(6):345-59.\par \par Jani NM, Lopes JM.\'a0 2008.\'a0\'a0Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p.. Mol Microbiol. 70(6):1529-39.\par \par Chen M, Lopes JM.\'a0 2007.\'a0\'a0Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.\par \par Hancock LC, Behta RP, Lopes JM.\'a0 2006.\'a0\'a0Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.\par \par Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM.\'a0 2005.\'a0\'a0Genomic analysis of PIS1 gene expression.. Eukaryot Cell. 4(3):604-14.\par \par Gardocki ME, Jani N, Lopes JM.\'a0 2005.\'a0\'a0Phosphatidylinositol biosynthesis: biochemistry and regulation.. Biochim Biophys Acta. 1735(2):89-100.\par \par Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.\'a0 2005.\'a0\'a0PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.\par \par Gardenour KR, Levy J, Lopes JM.\'a0 2004.\'a0\'a0Identification of novel dominant INO2c mutants with an Opi- phenotype.. Mol Microbiol. 52(5):1271-80.\par \par Gardocki M E, Lopes JM.\'a0 2003.\'a0\'a0Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.\par \par Kaadige MR, Lopes JM.\'a0 2003.\'a0\'a0Opi1p, Ume6p and Sin3p control expression from the promoter of the INO2 regulatory gene via a novel regulatory cascade.. Mol Microbiol. 48(3):823-32.\par \par Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.\'a0 2000.\'a0\'a0Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.\par \par Robinson KA, Koepke JI, Kharodawala M, Lopes JM.\'a0 2000.\'a0\'a0A network of yeast basic helix-loop-helix interactions.. Nucleic Acids Res. 28(22):4460-6.\par \par Robinson KA, Lopes JM.\'a0 2000.\'a0\'a0The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter.. J Bacteriol. 182(10):2746-52.\par \par Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.\'a0 1999.\'a0\'a0Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.\par \par Sandler SJ, Satin LH, Samra HS, Clark AJ.\'a0 1996.\'a0\'a0recA-like genes from three archaean species with putative protein products similar to Rad51 and Dmc1 proteins of the yeast Saccharomyces cerevisiae.. Nucleic Acids Res. 24(11):2125-32.\par \par }