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Philips J, Rabaey K, Lovley DR, Vargas M.\'a0 2017.\'a0\'a0Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.. PLoS One. 12(1):e0170406.\par \par Ueki T, DiDonato LN, Lovley DR.\'a0 2017.\'a0\'a0Toward establishing minimum requirements for extracellular electron transfer in Geobacter sulfurreducens.. FEMS Microbiol Lett. 364(9)\par \par Liu F, Rotaru A-E, Shrestha PM, Malvankar NS, Nevin KP, Lovley DR.\'a0 2015.\'a0\'a0Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.. Environ Microbiol. 17(3):648-55.\par \par Banerjee A, Leang C, Ueki T, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Lactose-inducible system for metabolic engineering of Clostridium ljungdahlii.. Appl Environ Microbiol. 80(8):2410-6.\par \par Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.\'a0 2014.\'a0\'a0Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.\par \par Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..\'a0 2013.\'a0\'a0Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.\par \par Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Ju\'e1rez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..\'a0 2013.\'a0\'a0Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.\par \par Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..\'a0 2013.\'a0\'a0Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.\par \par Butler JE, Young ND, Aklujkar M, Lovley DR.\'a0 2012.\'a0\'a0Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.\par \par Franks AE, Glaven RH, Lovley DR.\'a0 2012.\'a0\'a0Real-time spatial gene expression analysis within current-producing biofilms.. ChemSusChem. 5(6):1092-8.\par \par Tremblay P-L, Lovley DR.\'a0 2012.\'a0\'a0Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens.. J Bacteriol. 194(9):2248-53.\par \par Mahadevan R, Palsson B\'d8, Lovley DR.\'a0 2011.\'a0\'a0In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.\par \par Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.\'a0 2010.\'a0\'a0Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.\par \par Butler JE, Young ND, Lovley DR.\'a0 2010.\'a0\'a0Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.\par \par Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.\'a0 2010.\'a0\'a0Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.\par \par Krushkal J, Ju\'e1rez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.\'a0 2010.\'a0\'a0Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.\par \par N'guessan LA, Elifantz H, Nevin KP, Mouser PJ, Meth\'e9 B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT et al..\'a0 2010.\'a0\'a0Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer.. ISME J. 4(2):253-66.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens.. Nucleic Acids Res. 38(21):7485-99.\par \par Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Meth\'e9 BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..\'a0 2009.\'a0\'a0Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.\par \par Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.\'a0 2009.\'a0\'a0The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.\par \par Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Ju\'e1rez K, N\'fa\'f1ez C, Reguera G, DiDonato R, Postier B et al..\'a0 2009.\'a0\'a0Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.\par \par Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.\'a0 2009.\'a0\'a0GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.\par \par Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.\'a0 2009.\'a0\'a0Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.\par \par Ju\'e1rez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Meth\'e9 BA.\'a0 2009.\'a0\'a0PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.\par \par Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.\'a0 2008.\'a0\'a0Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.\par \par Segura D, Mahadevan R, Ju\'e1rez K, Lovley DR.\'a0 2008.\'a0\'a0Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Kim B-C, Postier BL, Didonato RJ, Chaudhuri SK, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.. Bioelectrochemistry. 73(1):70-5.\par \par Kim B-C, Lovley DR.\'a0 2008.\'a0\'a0Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens.. FEMS Microbiol Lett. 286(1):39-44.\par \par Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.\'a0 2008.\'a0\'a0Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.\par \par Yan B, Lovley DR, Krushkal J.\'a0 2007.\'a0\'a0Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.\par \par Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.\'a0 2007.\'a0\'a0Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.\par \par Ueki T, Lovley DR.\'a0 2007.\'a0\'a0Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par N\'fa\'f1ez C, Esteve-N\'fa\'f1ez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Meth\'e9 BA.\'a0 2006.\'a0\'a0DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.. J Bacteriol. 188(8):2792-800.\par \par Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Meth\'e9 BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR.\'a0 2006.\'a0\'a0Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.\par \par DiDonato LN, Sullivan SA, Meth\'e9 BA, Nevin KP, England R, Lovley DR.\'a0 2006.\'a0\'a0Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.\par \par Kim B-C, Leang C, Ding Y-HR, Glaven RH, Coppi MV, Lovley DR.\'a0 2005.\'a0\'a0OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens.. J Bacteriol. 187(13):4505-13.\par \par Leang C, Lovley DR.\'a0 2005.\'a0\'a0Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.\par \par N\'fa\'f1ez C, Adams L, Childers S, Lovley DR.\'a0 2004.\'a0\'a0The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens.. J Bacteriol. 186(16):5543-6.\par \par Lovley DR.\'a0 2002.\'a0\'a0Analysis of the genetic potential and gene expression of microbial communities involved in the in situ bioremediation of uranium and harvesting electrical energy from organic matter.. OMICS. 6(4):331-9.\par \par }